Chenopodium ficifolium is a close diploid relative of the tetraploid crop Chenopodium quinoa. Owing to its reproducible germination and seedling development, it becomes a promising model for studying floral induction, providing a basis for comparison with C. quinoa. Two C. ficifolium genotypes differ in photoperiodic requirement: C. ficifolium 283 accelerates flowering under long days, whereas C. ficifolium 459 flowers earlier under short days.

Somatic embryogenesis of conifers yields somatic embryos (SEs) that closely resemble non-mature cotyledonary zygotic embryos (ZEs). The most common method to improve the biochemical composition of SEs and reduce their water content to bring SEs closer to fully mature ZEs is cold treatment or desiccation at different relative humidity (RH). Both treatments can not only lead to successful SE germination but can also induce a stress response.

Nowadays, when climate change is becoming more and more evident, drought stress plays a very important role, including in agriculture. The increasing number of years with extreme temperatures in the Czech Republic has a negative impact on agricultural production, among other things. Therefore, ways are being sought to reduce these negative impacts. One of them may be the use of compochar (a mixture of compost and biochar) to improve water retention in the soil.

The workflow enables the quantification of autophagosomes in Arabidopsis thaliana root epidermal cells in 3D. It combines immunolabeling of an autophagosome marker ATG8 with commercially available anti-ATG antibody and the subsequent stereological quantification of the immunolabeled particles. The immunolabeled samples are imaged with a confocal microscope and Z-stacks are acquired.

Macroautophagy is often quantified by live imaging of autophagosomes labeled with fluorescently tagged ATG8 protein (FP-ATG8) in Arabidopsis thaliana. The labeled particles are then counted in single focal planes. This approach may lead to inaccurate results as the actual 3D distribution of autophagosomes is not taken into account and appropriate sampling in the Z-direction is not performed.